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What Is Mass Spectrometry?

What is mass spectrometry peptide identity featured image

Mass spectrometry (often “mass spec” or MS) is the standard way to confirm a peptide’s identity. While HPLC measures how pure a sample is, mass spec answers a different question: is this actually the right molecule? Here’s a plain-English overview.

  • What it does: measures a molecule’s mass to confirm its identity.
  • Pairs with HPLC: purity (HPLC) + identity (MS) together.
  • On the COA: a good Certificate of Analysis reports both.

How it works

A mass spectrometer ionizes the molecules in a sample and measures their mass-to-charge ratio. The result is a precise molecular weight. If that measured weight matches the expected weight for the peptide’s sequence, the identity is confirmed — see peptide molecular weight.

Purity vs identity

QuestionMethod
Is it the right molecule?Mass spectrometry
How much is the target?HPLC
Where are both reported?Certificate of Analysis

Both tests together give a complete picture of what’s in a vial.

Research use only. For educational purposes. Compounds referenced are sold strictly for in vitro laboratory research by qualified professionals.

Every batch we sell is identity- & purity-verified
Third-party Certificates of Analysis on each lot.

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